Cytosim  PI
Cytoskeleton Simulator

A Space define a confined region. More...

Classes

class  SpaceCapsule
 a spherocylinder (cylinder capped with hemispheres) More...
 
class  SpaceCylinder
 a cylinder of axis X More...
 
class  SpaceCylinderP
 a cylinder of axis X that is periodic along X More...
 
class  SpaceCylinderZ
 a cylinder of axis Z More...
 
class  SpacePolygon
 a polygonal convex region in space More...
 
class  SpaceSphere
 sphere centered at the origin. More...
 
class  SpaceSquare
 a rectangular region More...
 

Detailed Description

The Space above contain more functionalities, and should be used in priority.

A Space is created by specifying a geometry:

set space NAME
{
geometry = GEOMETRY DIMENSIONS
}

DIMENSIONS is usually a list of numbers.

List of known geometry:

GEOMETRY Class DIMENSIONS
rectangle SpaceSquare sizeX sizeY sizeZ
sphere SpaceSphere radius
polygon SpacePolygon file_name height
capsule SpaceCapsule half_length radius
torus SpaceTorus half_length thickness radius
dice SpaceDice sizeX sizeY sizeZ radius
strip SpaceStrip sizeX sizeY sizeZ
periodic SpacePeriodic sizeX sizeY sizeZ
ellipse SpaceEllipse sizeX sizeY sizeZ
cylinder SpaceCylinder half_length radius
cylinderZ SpaceCylinderZ half_length radius
cylinderP SpaceCylinderP half_length radius

Example:

set space cell
{
geometry = sphere 5
}