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Cytosim
PI
Cytoskeleton Simulator
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A Space define a confined region. More...
Classes | |
| class | SpaceCapsule |
| a spherocylinder (cylinder capped with hemispheres) More... | |
| class | SpaceCylinder |
| a cylinder of axis X More... | |
| class | SpaceCylinderP |
| a cylinder of axis X that is periodic along X More... | |
| class | SpaceCylinderZ |
| a cylinder of axis Z More... | |
| class | SpacePolygon |
| a polygonal convex region in space More... | |
| class | SpaceSphere |
| sphere centered at the origin. More... | |
| class | SpaceSquare |
| a rectangular region More... | |
The Space above contain more functionalities, and should be used in priority.
A Space is created by specifying a geometry:
DIMENSIONS is usually a list of numbers.
List of known geometry:
| GEOMETRY | Class | DIMENSIONS |
|---|---|---|
rectangle | SpaceSquare | sizeX sizeY sizeZ |
sphere | SpaceSphere | radius |
polygon | SpacePolygon | file_name height |
capsule | SpaceCapsule | half_length radius |
torus | SpaceTorus | half_length thickness radius |
dice | SpaceDice | sizeX sizeY sizeZ radius |
strip | SpaceStrip | sizeX sizeY sizeZ |
periodic | SpacePeriodic | sizeX sizeY sizeZ |
ellipse | SpaceEllipse | sizeX sizeY sizeZ |
cylinder | SpaceCylinder | half_length radius |
cylinderZ | SpaceCylinderZ | half_length radius |
cylinderP | SpaceCylinderP | half_length radius |
Example: